High-Speed X-Ray Lasers Reveal the Secret Crystal Structures of Small Molecules

X Ray Beam Illuminating Chalcogenolates

Artist’s rendition of the X-ray beam illuminating an answer of powdered metal-organic supplies known as chalcogenolates. Credit score: Ella Maru Studios

Excessive-speed X-ray free-electron lasers have unlocked the crystal constructions of small molecules related to chemistry and supplies science, proving a brand new technique that might advance semiconductor and photo voltaic cell growth.

Compounds that type tiny crystals maintain secrets and techniques which may speed up renewable power manufacturing and semiconductor growth. The discovering of their atom association has already led to advances in supplies analysis and photo voltaic cells. Current strategies for figuring out these constructions, nevertheless, could cause hurt to delicate microcrystals.

Now scientists have a brand new device of their device belts: a system for investigating microcrystals by the hundreds with ultrafast pulses from an X-ray free-electron laser (XFEL), which may gather structural data earlier than harm units in. This method, developed over the previous decade to review proteins and different massive organic molecules on the Division of Power’s SLAC Nationwide Accelerator Laboratory, has now been utilized for the primary time to small molecules which might be of curiosity to chemistry and supplies science.

Researchers from the College of Connecticut, SLAC, DOE’s Lawrence Berkeley Nationwide Laboratory and different establishments developed the brand new course of, known as small molecule serial femtosecond X-ray crystallography or smSFX, to find out the constructions of three compounds that type microcrystal powders, together with two that had been beforehand unknown. The experiments came about at SLAC’s Linac Coherent Gentle Supply (LCLS) XFEL and the SACLA XFEL in Japan.

The brand new method is more likely to have a huge impact because it must be “broadly relevant throughout XFEL and synchrotron radiation services geared up for serial crystallography,” the analysis workforce wrote in a paper revealed on January nineteenth, 2022 in Nature.

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X Ray Free Electron Laser SLAC

This exhibits the experimental equipment earlier than the measurement. The orange yellow tape hanging off the clear injector pipe in the midst of the picture marks the spot the place the X-rays will meet the pattern. Credit score: Nate Hohman

Disentangling metallic compounds

Researchers used the tactic to find out the constructions of two metal-organic supplies, thiorene and tethrene, for the primary time. Each are potential candidates to be used in next-generation subject impact transistors, power storage units, and photo voltaic cells and panels. Mapping thiorene and tethrene allowed researchers to raised perceive why another metal-organic supplies glow shiny blue below ultraviolet mild, which the scientists in comparison with Frodo’s magical sword, Sting, in The Lord of the Rings.

“Figuring out the crystal construction of supplies is the start line to implementing them into units and fascinated about the engineering functions,” UConn researcher and paper co-author Elyse Schriber stated.

But many supplies resist being fashioned into the big crystals wanted for traditional X-ray crystallography, stated Nicholas Sauter, a pc scientist at Berkeley Lab. “Most substances as a substitute type powders,” he stated, “whose X-ray diffraction patterns are more durable to disentangle.”

Fixing crystal constructions with smSFX may speed up the modeling of different microcrystal constructions and result in the invention of recent supplies which might be used for molecular machines, put on mechanisms in batteries, and fuels, LCLS Director Mike Dunne stated: “It’s thrilling analysis that takes LCLS in a brand new course. Any such cross-over science, leveraging advances in bioscience into different areas corresponding to superior supplies science, is a superb instance of how our DOE consumer services can deliver collectively completely different areas of the analysis neighborhood.”

Every new crystal construction is uploaded to a worldwide crystallographic database hosted by Cambridge College, Schriber stated, the place scientists can use it to check theories and assist discover compounds which might be helpful for a particular activity. In different crystal mapping strategies, researchers usually cherry-pick the perfect crystals in a set to mannequin, she stated, whereas with smSFX, “we're in a position to get a extra holistic view of the crystals over all the set, so it’s a greater mannequin of what a fabric seems like.”

Duck sauce

The experiment didn’t go precisely as deliberate, however a little bit creativity saved the day. Microcrystals should be delivered to the X-ray beam through a liquid pattern supply system for XFEL serial crystallography investigations. The researchers tried to move the microcrystals utilizing methanol however found that it was incompatible with the epoxy on a nozzle via which the liquid pattern flowed. In some circumstances, it melted the nozzle.

So as to add to their stress, they knew that they may not ship their microcrystals utilizing water as a result of their crystals had waxy natural elements that made them hydrophobic. Water would clog the system and stick crystals to the perimeters of the supply system piping.

In a pickle with little beam time to spare, the workforce remembered that dish detergent had been used for remediation of oil spills. They shortly searched and located a bottle of detergent, blended it with water, dubbed the mixture “duck sauce,” and despatched the combination via the supply system.

“I by no means in my life thought I’d be singing the praises of dish cleaning soap, however it's a improbable suspender for our supplies,” Schriber stated. “If we had not used the detergent-water combination we'd not have been in a position to full our experiment in any respect.”

The way forward for fragile crystals

As for what’s subsequent, researchers wish to map the crystal constructions of a giant number of supplies as a result of “any one in all them may have an unbelievable property that we don’t find out about,” Schriber stated.

“Having a construction hastily opens up the chance to foretell many different materials properties,” she stated.

The analysis workforce additionally says that the XFEL-smSFX course of may change into quicker, resulting in the invention of an unlimited variety of unknown crystal constructions, they usually’re engaged on streamlining the tactic.

Along with LCLS, components of this analysis had been carried out on the SACLA XFEL in Japan, the Nationwide Power Analysis Scientific Computing Middle (NERSC) and Berkeley Lab’s Molecular Foundry and supported by the DOE Workplace of Science. NERSC and LCLS are DOE Workplace of Science consumer services.

Reference: “Chemical crystallography by serial femtosecond X-ray diffraction” by Elyse A. Schriber, Daniel W. Paley, Robert Bolotovsky, Daniel J. Rosenberg, Raymond G. Sierra, Andrew Aquila, Derek Mendez, Frédéric Poitevin, Johannes P. Blaschke, Asmit Bhowmick, Ryan P. Kelly, Mark Hunter, Brandon Hayes, Derek C. Popple, Matthew Yeung, Carina Pareja-Rivera, Stella Lisova, Kensuke Tono, Michihiro Sugahara, Shigeki Owada, Tevye Kuykendall, Kaiyuan Yao, P. James Schuck, Diego Solis-Ibarra, Nicholas Ok. Sauter, Aaron S. Brewster, and J. Nathan Hohman, 19 January 2022, Nature.
DOI: 10.1038/s41586-021-04218-3

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